STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDR47541.1Carbohydrate kinase, FGGY family protein; KEGG: cpf:CPF_1049 1.1e-70 fucK; L-fuculokinase K00879; COG: COG1070 Sugar (pentulose and hexulose) kinases; Psort location: Cytoplasmic, score: 8.87. (493 aa)    
Predicted Functional Partners:
xylB
Xylulokinase; KEGG: mta:Moth_2025 8.6e-110 xylulokinase K00854; COG: COG1070 Sugar (pentulose and hexulose) kinases; Psort location: Cytoplasmic, score: 8.87.
  
  
  0.865
EDR47545.1
Putative L-ribulose-5-phosphate 4-epimerase; KEGG: chy:CHY_1555 1.4e-36 fucA2; L-fuculose phosphate aldolase K01628; COG: COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases; Psort location: Cytoplasmic, score: 8.87.
 
 
 0.809
EDR47540.1
Glycyl-radical enzyme activating protein family protein; KEGG: cno:NT01CX_0497 3.9e-59 pflC; pyruvate formate-lyase K00538; COG: COG1180 Pyruvate-formate lyase-activating enzyme; Psort location: Cytoplasmic, score: 9.98.
  
    0.768
EDR47539.1
Putative formate C-acetyltransferase; KEGG: cno:NT01CX_0385 3.1e-144 pyruvate formate-lyase K00656; COG: COG1882 Pyruvate-formate lyase; Psort location: Cytoplasmic, score: 9.98.
  
    0.754
EDR45715.1
RDD family protein; Psort location: Cytoplasmic, score: 8.87.
  
  
 0.707
EDR47314.1
KEGG: gka:GK1906 7.1e-83 araD; L-ribulose-5-phosphate 4-epimerase K01786; COG: COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases; Psort location: Cytoplasmic, score: 8.87.
 
 
 0.631
rpe
KEGG: cpe:CPE1736 1.1e-59 ribulose-phosphate 3-epimerase K01783; COG: COG0036 Pentose-5-phosphate-3-epimerase; Psort location: Cytoplasmic, score: 8.87.
    
 0.606
EDR47542.1
ABC transporter, ATP-binding protein; KEGG: tte:TTE0763 1.3e-122 mglA4; ABC-type sugar (aldose) transport system, ATPase component K02056; COG: COG1129 ABC-type sugar transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49.
  
  
 0.601
EDR47543.1
Branched-chain amino acid ABC transporter, permease protein; KEGG: msm:MSMEG_4171 7.2e-58 ribose transport system permease protein RbsC; COG: COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components; Psort location: CytoplasmicMembrane, score: 10.00.
  
  
 0.597
EDR47544.1
Sugar-binding domain protein; KEGG: msm:MSMEG_3095 3.4e-28 D-ribose-binding periplasmic protein; COG: COG1879 ABC-type sugar transport system, periplasmic component.
  
    0.586
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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