STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDR47573.1KEGG: bsu:BG10825 9.7e-31 cwlC; N-acetylmuramoyl-L-alanine amidase, peptidoglycan hydrolase, LytC amidase family K01448; COG: COG0860 N-acetylmuramoyl-L-alanine amidase; Psort location: Cytoplasmic, score: 8.87. (256 aa)    
Predicted Functional Partners:
EDR48053.1
Transglycosylase; KEGG: swo:Swol_1109 1.1e-88 peptidoglycan glycosyltransferase K05364; COG: COG0744 Membrane carboxypeptidase (penicillin-binding protein); Psort location: Extracellular, score: 9.55.
 
 
 0.961
EDR46175.1
N-acetylmuramoyl-L-alanine amidase; KEGG: ctc:CTC02570 3.1e-34 germination-specific N-acetylmuramoyl-L-alanine amidase K01448; COG: COG0860 N-acetylmuramoyl-L-alanine amidase.
  
0.933
EDR47652.1
KEGG: bca:BCE_2849 5.0e-34 N-acetylmuramoyl-L-alanine amidase K01448; COG: COG0860 N-acetylmuramoyl-L-alanine amidase.
  
 0.932
EDR47793.1
Hypothetical protein; COG: COG1589 Cell division septal protein.
  
 
 0.915
EDR46833.1
KEGG: bce:BC4687 2.2e-40 N-acetylmuramoyl-L-alanine amidase K01446; COG: COG0860 N-acetylmuramoyl-L-alanine amidase.
  
 0.904
EDR47879.1
N-acetylmuramoyl-L-alanine amidase; KEGG: spn:SP_0965 1.9e-44 endo-beta-N-acetylglucosaminidase K01227; COG: COG5263 FOG: Glucan-binding domain (YG repeat); Psort location: Extracellular, score: 8.10.
 
0.885
EDR46511.1
NlpC/P60 family protein; KEGG: bat:BAS5084 6.4e-11 N-acetylmuramoyl-L-alanine amidase, C-terminus K01446; COG: COG0791 Cell wall-associated hydrolases (invasion-associated proteins); Psort location: Extracellular, score: 9.73.
  
 
 0.855
EDR48020.1
Putative peptidoglycan binding domain protein; KEGG: cac:CAC0554 0.0056 lyc; autolytic lysozime (1,4-beta-N-acetylmuramidase), family 25 of glycosyl hydrolases; peptodoglycan-binding domain K01185; COG: NOG36567 non supervised orthologous group.
 
  
 0.826
EDR47811.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
    
  0.774
EDR47816.1
KEGG: lil:LA2200 4.5e-26 amiB2; putative N-acetylmuramoyl-L-alanine amidase K01447; COG: COG5632 N-acetylmuramoyl-L-alanine amidase.
  
 
 0.757
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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