STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDR47607.1Hypothetical protein; Psort location: Cytoplasmic, score: 8.87. (407 aa)    
Predicted Functional Partners:
hemC
Hydroxymethylbilane synthase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps.
  
  
 0.848
cobA
uroporphyrinogen-III C-methyltransferase; KEGG: cno:NT01CX_0261 1.5e-89 uroporphyrinogen III synthase/methyltransferase K00589; COG: COG1587 Uroporphyrinogen-III synthase; Psort location: Cytoplasmic, score: 8.87.
  
  
 0.848
rnfB
Electron transport complex, RnfABCDGE type, B subunit; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily.
    
 0.825
modB
Molybdate ABC transporter, permease protein; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
  
 
 0.785
EDR47603.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.778
EDR47604.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.773
EDR47605.1
Hypothetical protein; KEGG: xoo:XOO1041 9.3e-10 rnhA; ribonuclease H K03469; COG: COG0328 Ribonuclease HI; Psort location: Cytoplasmic, score: 8.87.
       0.773
EDR47606.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.773
EDR47496.1
ABC transporter, ATP-binding protein; KEGG: syn:sll0739 5.6e-67 modBC; ABC-type molybdate transport system permease/ATP-binding protein K02018; COG: COG1118 ABC-type sulfate/molybdate transport systems, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49.
  
 
 0.730
EDR47608.1
Hypothetical protein; KEGG: spi:MGAS10750_Spy0587 1.3e-33 methyltransferase K00599; COG: NOG11045 non supervised orthologous group.
       0.605
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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