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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDR47625.1Site-specific recombinase, phage integrase family; COG: COG0582 Integrase; Psort location: Cytoplasmic, score: 8.87; Belongs to the 'phage' integrase family. (343 aa)    
Predicted Functional Partners:
EDR47626.1
Hypothetical protein.
       0.768
nifJ
KEGG: ctc:CTC01741 0. pyruvate-flavodoxin oxidoreductase K03737; COG: COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit; Psort location: Cytoplasmic, score: 8.87.
    
  0.729
EDR47629.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
 
     0.530
EDR47640.1
Phage tail tape measure protein, TP901 family; KEGG: cal:orf19.4072 8.4e-09 HYR10; similar to cell surface flocculin K01186; COG: COG5283 Phage-related tail protein; Psort location: Cellwall, score: 9.17.
 
     0.527
EDR47627.1
Phage terminase, large subunit, PBSX family; COG: COG1783 Phage terminase large subunit; Psort location: Cytoplasmic, score: 8.87.
 
     0.502
EDR47623.1
Hypothetical protein.
       0.480
EDR47624.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.480
EDR47622.1
Hypothetical protein; KEGG: nph:NP1018A 0.00024 atpH; H(+)-transporting two-sector ATPase subunit H.a (A-type ATP synthase) K02121; COG: COG2337 Growth inhibitor; Psort location: Cytoplasmic, score: 8.87.
       0.474
EDR47620.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.466
EDR47621.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.466
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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