STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDR47651.1COG: COG4824 Phage-related holin (Lysis protein); Psort location: CytoplasmicMembrane, score: 9.99. (173 aa)    
Predicted Functional Partners:
EDR47647.1
Hypothetical protein; KEGG: bsu:BG10233 6.5e-18 bpr, bpf; bacillopeptidase F; COG: COG4412 Uncharacterized protein conserved in bacteria; Psort location: Extracellular, score: 9.55.
 
     0.752
EDR47648.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.718
EDR47649.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.718
EDR47650.1
Hypothetical protein.
       0.718
EDR47646.1
Hypothetical protein.
       0.670
EDR47087.1
NlpC/P60 family protein; KEGG: bce:BC5234 2.5e-20 N-acetylmuramoyl-L-alanine amidase K01446; COG: COG0791 Cell wall-associated hydrolases (invasion-associated proteins); Psort location: Extracellular, score: 9.73.
 
     0.644
EDR47645.1
Hypothetical protein.
       0.620
EDR47738.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.571
EDR47301.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.570
EDR47652.1
KEGG: bca:BCE_2849 5.0e-34 N-acetylmuramoyl-L-alanine amidase K01448; COG: COG0860 N-acetylmuramoyl-L-alanine amidase.
       0.561
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.