STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDR47652.1KEGG: bca:BCE_2849 5.0e-34 N-acetylmuramoyl-L-alanine amidase K01448; COG: COG0860 N-acetylmuramoyl-L-alanine amidase. (287 aa)    
Predicted Functional Partners:
EDR47651.1
COG: COG4824 Phage-related holin (Lysis protein); Psort location: CytoplasmicMembrane, score: 9.99.
       0.561
EDR47653.1
DNA-binding helix-turn-helix protein; COG: COG1396 Predicted transcriptional regulators.
   
   0.532
EDR45905.1
Peptidase, M23 family; KEGG: ava:Ava_0183 1.0e-44 peptidase M23B K08259; COG: COG0739 Membrane proteins related to metalloendopeptidases; Psort location: Extracellular, score: 9.73.
 
 
   0.527
EDR46080.1
NlpC/P60 family protein; KEGG: bat:BAS5084 6.5e-18 N-acetylmuramoyl-L-alanine amidase, C-terminus K01446; COG: COG0791 Cell wall-associated hydrolases (invasion-associated proteins); Psort location: Extracellular, score: 9.55.
  
  
 0.514
EDR47573.1
KEGG: bsu:BG10825 9.7e-31 cwlC; N-acetylmuramoyl-L-alanine amidase, peptidoglycan hydrolase, LytC amidase family K01448; COG: COG0860 N-acetylmuramoyl-L-alanine amidase; Psort location: Cytoplasmic, score: 8.87.
  
 
 0.508
EDR46511.1
NlpC/P60 family protein; KEGG: bat:BAS5084 6.4e-11 N-acetylmuramoyl-L-alanine amidase, C-terminus K01446; COG: COG0791 Cell wall-associated hydrolases (invasion-associated proteins); Psort location: Extracellular, score: 9.73.
  
  
 0.462
EDR45618.1
Hypothetical protein; KEGG: ava:Ava_0183 2.2e-10 peptidase M23B K08259; COG: COG0791 Cell wall-associated hydrolases (invasion-associated proteins); Psort location: Extracellular, score: 9.95.
   
   0.455
EDR47647.1
Hypothetical protein; KEGG: bsu:BG10233 6.5e-18 bpr, bpf; bacillopeptidase F; COG: COG4412 Uncharacterized protein conserved in bacteria; Psort location: Extracellular, score: 9.55.
     
 0.452
EDR47648.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.448
EDR47649.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.448
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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