STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDR47289.1KEGG: aha:AHA_1905 4.4e-06 L-arabinose ABC transporter, permease protein; COG: COG4603 ABC-type uncharacterized transport system, permease component; Psort location: CytoplasmicMembrane, score: 9.99. (366 aa)    
Predicted Functional Partners:
EDR47288.1
Branched-chain amino acid ABC transporter, permease protein; COG: COG1079 Uncharacterized ABC-type transport system, permease component; Psort location: CytoplasmicMembrane, score: 9.99.
 
 0.999
EDR47290.1
ABC transporter, ATP-binding protein; KEGG: tte:TTE0458 1.2e-114 mglA3; ABC-type sugar (aldose) transport system, ATPase component K02056; COG: COG3845 ABC-type uncharacterized transport systems, ATPase components; Psort location: CytoplasmicMembrane, score: 9.49.
 
 
 0.998
EDR47291.1
Basic membrane protein; COG: COG1744 Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein.
 
 
 0.980
EDR48413.1
Basic membrane protein; COG: COG1744 Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein; Psort location: Cytoplasmic, score: 8.87.
 
 
 0.863
EDR47283.1
Hypothetical protein; COG: COG2313 Uncharacterized enzyme involved in pigment biosynthesis; Psort location: Cytoplasmic, score: 8.87.
 
     0.785
EDR47542.1
ABC transporter, ATP-binding protein; KEGG: tte:TTE0763 1.3e-122 mglA4; ABC-type sugar (aldose) transport system, ATPase component K02056; COG: COG1129 ABC-type sugar transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49.
 
  
  0.761
EDR47284.1
Kinase, PfkB family; KEGG: btl:BALH_0607 2.3e-22 rbsK; ribokinase K00852; COG: COG0524 Sugar kinases, ribokinase family; Psort location: Cytoplasmic, score: 8.87.
       0.732
EDR47285.1
Putative nitrogenase iron protein; KEGG: swo:Swol_0408 6.7e-71 nitrogenase K00531; COG: COG1348 Nitrogenase subunit NifH (ATPase); Psort location: Cytoplasmic, score: 8.87; Belongs to the NifH/BchL/ChlL family.
     
 0.719
EDR47286.1
Hypothetical protein; KEGG: sfu:Sfum_1013 6.7e-09 nitrogenase MoFe cofactor biosynthesis protein NifE K00531; COG: COG2710 Nitrogenase molybdenum-iron protein, alpha and beta chains; Psort location: Cytoplasmic, score: 8.87.
       0.718
EDR47287.1
Hypothetical protein; KEGG: mth:MTH1563 7.3e-07 NifD; nitrogenase molybdenum-iron protein alpha chain (nitrogenase component I) (dinitrogenase) K02586; COG: COG2710 Nitrogenase molybdenum-iron protein, alpha and beta chains.
       0.718
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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