STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDR47319.1KEGG: blo:BL0034 2.2e-127 ATP binding protein of ABC transporter K02056; COG: COG1129 ABC-type sugar transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.82. (509 aa)    
Predicted Functional Partners:
EDR47317.1
Branched-chain amino acid ABC transporter, permease protein; KEGG: msm:MSMEG_4171 3.8e-36 ribose transport system permease protein RbsC; COG: COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components; Psort location: CytoplasmicMembrane, score: 10.00.
 
 0.995
EDR47318.1
Branched-chain amino acid ABC transporter, permease protein; KEGG: msm:MSMEG_1710 6.4e-50 ribose transport system permease protein RbsC; COG: COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components; Psort location: CytoplasmicMembrane, score: 10.00.
 
 0.995
EDR47320.1
Hypothetical protein; KEGG: msm:MSMEG_3095 2.5e-10 D-ribose-binding periplasmic protein; COG: COG1879 ABC-type sugar transport system, periplasmic component.
 
  0.993
EDR47323.1
Sugar-binding domain protein; KEGG: msm:MSMEG_3095 3.5e-19 D-ribose-binding periplasmic protein; COG: COG1879 ABC-type sugar transport system, periplasmic component.
 
  0.976
EDR47543.1
Branched-chain amino acid ABC transporter, permease protein; KEGG: msm:MSMEG_4171 7.2e-58 ribose transport system permease protein RbsC; COG: COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components; Psort location: CytoplasmicMembrane, score: 10.00.
 
 0.935
EDR47544.1
Sugar-binding domain protein; KEGG: msm:MSMEG_3095 3.4e-28 D-ribose-binding periplasmic protein; COG: COG1879 ABC-type sugar transport system, periplasmic component.
 
   0.883
EDR47981.1
Sugar-binding domain protein; KEGG: msm:MSMEG_3095 1.0e-28 D-ribose-binding periplasmic protein; COG: COG1879 ABC-type sugar transport system, periplasmic component.
 
   0.870
EDR46786.1
Hypothetical protein; KEGG: msm:MSMEG_3095 1.1e-17 D-ribose-binding periplasmic protein; COG: COG1879 ABC-type sugar transport system, periplasmic component.
 
   0.842
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
  
  
 0.801
EDR48254.1
Hypothetical protein; KEGG: msm:MSMEG_3095 1.6e-08 D-ribose-binding periplasmic protein; COG: COG1879 ABC-type sugar transport system, periplasmic component; Psort location: Cytoplasmic, score: 8.87.
 
   0.798
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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