STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDR47323.1Sugar-binding domain protein; KEGG: msm:MSMEG_3095 3.5e-19 D-ribose-binding periplasmic protein; COG: COG1879 ABC-type sugar transport system, periplasmic component. (338 aa)    
Predicted Functional Partners:
EDR47318.1
Branched-chain amino acid ABC transporter, permease protein; KEGG: msm:MSMEG_1710 6.4e-50 ribose transport system permease protein RbsC; COG: COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components; Psort location: CytoplasmicMembrane, score: 10.00.
 
  0.977
EDR47317.1
Branched-chain amino acid ABC transporter, permease protein; KEGG: msm:MSMEG_4171 3.8e-36 ribose transport system permease protein RbsC; COG: COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components; Psort location: CytoplasmicMembrane, score: 10.00.
 
  0.976
EDR47319.1
KEGG: blo:BL0034 2.2e-127 ATP binding protein of ABC transporter K02056; COG: COG1129 ABC-type sugar transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.82.
 
  0.976
EDR47320.1
Hypothetical protein; KEGG: msm:MSMEG_3095 2.5e-10 D-ribose-binding periplasmic protein; COG: COG1879 ABC-type sugar transport system, periplasmic component.
  
  
 
0.914
EDR47543.1
Branched-chain amino acid ABC transporter, permease protein; KEGG: msm:MSMEG_4171 7.2e-58 ribose transport system permease protein RbsC; COG: COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components; Psort location: CytoplasmicMembrane, score: 10.00.
   0.899
EDR47542.1
ABC transporter, ATP-binding protein; KEGG: tte:TTE0763 1.3e-122 mglA4; ABC-type sugar (aldose) transport system, ATPase component K02056; COG: COG1129 ABC-type sugar transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49.
 
   0.854
EDR47324.1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: ctc:CTC01848 5.7e-58 yesM; two-component sensor kinase YesM K07718; COG: COG2972 Predicted signal transduction protein with a C-terminal ATPase domain; Psort location: Cytoplasmic, score: 8.87.
 
     0.840
EDR48417.1
Hypothetical protein.
   
 
 0.821
EDR46781.1
KEGG: tde:TDE2216 6.0e-173 mglA; galactoside ABC transporter, ATP-binding protein K02056; COG: COG1129 ABC-type sugar transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49.
 
   0.808
EDR48301.1
Hypothetical protein; KEGG: tcx:Tcr_2180 1.1e-64 PAS/PAC sensor hybrid histidine kinase K07679; COG: COG0642 Signal transduction histidine kinase; Psort location: CytoplasmicMembrane, score: 10.00.
   
 
 0.796
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.