STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDR47338.1COG: COG4640 Predicted membrane protein. (400 aa)    
Predicted Functional Partners:
EDR47337.1
Von Willebrand factor type A domain protein; KEGG: cal:orf19.1648 0.00031 RAD50; DNA repair protein K01553; COG: COG2304 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain.
       0.773
EDR47339.1
Hypothetical protein; KEGG: ava:Ava_1700 1.3e-11 serine/threonine protein kinase K08884; COG: NOG22472 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
       0.741
EDR47340.1
COG: COG4640 Predicted membrane protein.
       0.741
EDR47341.1
KEGG: ava:Ava_0354 0.0060 protein serine/threonine phosphatase K01090; COG: COG4260 Putative virion core protein (lumpy skin disease virus); Psort location: Cytoplasmic, score: 8.87.
 
     0.589
EDR46638.1
Hypothetical protein; COG: NOG21980 non supervised orthologous group.
  
     0.404
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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