STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDR47405.1Hypothetical protein; KEGG: zmo:ZMO1889 4.7e-54 SAM-dependent methyltransferase K00568; COG: COG1092 Predicted SAM-dependent methyltransferases; Psort location: Cytoplasmic, score: 8.87. (287 aa)    
Predicted Functional Partners:
EDR47404.1
PHP domain protein; KEGG: mma:MM0508 1.1e-17 isoleucyl-tRNA synthetase K01870; COG: COG0613 Predicted metal-dependent phosphoesterases (PHP family); Psort location: Cytoplasmic, score: 8.87.
       0.482
EDR46271.1
RNA pseudouridine synthase; KEGG: chu:CHU_3766 9.6e-24 rluC; ribosomal pseudouridine synthase C, large subunit K01718; COG: COG0564 Pseudouridylate synthases, 23S RNA-specific.
 
 
 
 0.426
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.