STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDR47409.1Efflux ABC transporter, permease protein; KEGG: cch:Cag_0337 3.5e-19 ATPase K06020; COG: COG0577 ABC-type antimicrobial peptide transport system, permease component; Psort location: CytoplasmicMembrane, score: 9.99. (464 aa)    
Predicted Functional Partners:
EDR47411.1
ABC transporter, ATP-binding protein; KEGG: fal:FRAAL2864 1.0e-49 putative transport protein of outer membrane lipoproteins (ABC superfamily, atp_bind) (partial match); COG: COG1136 ABC-type antimicrobial peptide transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49.
  0.978
EDR47410.1
Hypothetical protein; KEGG: mmu:18218 0.0063 Dusp8; dual specificity phosphatase 8 K04459; COG: NOG29868 non supervised orthologous group.
 
    0.961
EDR48499.1
KEGG: fal:FRAAL5379 3.6e-56 ABC transporter ATP-binding protein K06020; COG: COG1136 ABC-type antimicrobial peptide transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49.
  0.733
EDR45383.1
ABC transporter, ATP-binding protein; KEGG: fal:FRAAL2864 4.1e-48 putative transport protein of outer membrane lipoproteins (ABC superfamily, atp_bind) (partial match); COG: COG1136 ABC-type antimicrobial peptide transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.82.
  0.722
EDR46726.1
KEGG: fal:FRAAL5379 1.7e-51 ABC transporter ATP-binding protein K06020; COG: COG1136 ABC-type antimicrobial peptide transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49.
 0.643
EDR45821.1
ABC transporter, ATP-binding protein; KEGG: fal:FRAAL2864 6.1e-45 putative transport protein of outer membrane lipoproteins (ABC superfamily, atp_bind) (partial match); COG: COG1136 ABC-type antimicrobial peptide transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.82.
 0.635
EDR48012.1
Putative bacteriocin export ABC transporter, lactococcin 972 group; KEGG: lwe:lwe2133 3.2e-64 ABC transporter, ATP-binding protein K06020; COG: COG1136 ABC-type antimicrobial peptide transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49.
 
  0.605
EDR47848.1
Hypothetical protein; KEGG: pfa:PF13_0232 5.1e-11 Casein kinase II regulatory subunit, putative K03115; COG: KOG1477 SPRY domain-containing proteins.
  
    0.583
EDR45948.1
Hypothetical protein; KEGG: cac:CAC0404 2.2e-09 serine/threonine protein kinase fused to TPR repeats domain K08884; COG: COG0515 Serine/threonine protein kinase; Psort location: Cytoplasmic, score: 8.87.
 
    0.546
EDR45457.1
Putative bacteriocin export ABC transporter, lactococcin 972 group; KEGG: smu:SMU.1178c 9.4e-33 putative amino acid ABC transporter, ATP-binding protein K02028; COG: COG1136 ABC-type antimicrobial peptide transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.82.
 
 0.537
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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