STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amaBN-carbamoyl-L-amino-acid hydrolase; KEGG: rba:RB13304 7.6e-79 amaB; N-carbamoyl-L-amino acid amidohydrolase; COG: COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases; Psort location: Cytoplasmic, score: 8.87. (426 aa)    
Predicted Functional Partners:
EDR45783.1
Putative allantoinase; KEGG: chy:CHY_0678 5.4e-69 allB; allantoinase K01466; COG: COG0044 Dihydroorotase and related cyclic amidohydrolases; Psort location: Cytoplasmic, score: 8.87.
 
 
 0.926
EDR45780.1
Putative allantoin catabolism protein; COG: COG3257 Uncharacterized protein, possibly involved in glyoxylate utilization; Psort location: Cytoplasmic, score: 8.87.
 
 
  0.902
EDR45358.1
Aldehyde dehydrogenase (NAD) family protein; KEGG: bca:BCE_1397 3.1e-121 ywdH; aldehyde dehydrogenase K00128; COG: COG1012 NAD-dependent aldehyde dehydrogenases; Psort location: Cytoplasmic, score: 9.98.
    
 0.747
gltA
KEGG: cno:NT01CX_0466 6.1e-180 gltA; glutamate synthase (NADPH), homotetrameric K00264; COG: COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases; Psort location: Cytoplasmic, score: 9.98.
  
 
  0.734
EDR46954.1
Purine catabolism regulatory protein-like family; COG: COG2508 Regulator of polyketide synthase expression; Psort location: Cytoplasmic, score: 8.87.
 
     0.724
EDR46956.1
FAD dependent oxidoreductase; KEGG: mlo:mlr1283 5.5e-28 sarcosine dehydrogenase K00314; COG: COG0665 Glycine/D-amino acid oxidases (deaminating); Psort location: Cytoplasmic, score: 8.87.
 
  
 0.710
ncs1
NCS1 nucleoside transporter family protein; COG: COG1953 Cytosine/uracil/thiamine/allantoin permeases; Psort location: CytoplasmicMembrane, score: 10.00.
 
  
 0.650
EDR48330.1
Aminotransferase, class V; KEGG: bsu:BG13993 2.1e-124 yurG; putative aminotransferase K00839; COG: COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase; Psort location: Cytoplasmic, score: 8.87.
 
 
  0.647
argC
N-acetyl-gamma-glutamyl-phosphate reductase; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 1 subfamily.
  
 0.564
etfA
Electron transfer flavoprotein FAD-binding domain protein; KEGG: fnu:FN1424 7.8e-17 acyl-CoA dehydrogenase, short-chain specific K00248; COG: COG2025 Electron transfer flavoprotein, alpha subunit; Psort location: Cytoplasmic, score: 8.87.
  
 
  0.561
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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