STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDR46973.1Hypothetical protein; COG: COG1512 Beta-propeller domains of methanol dehydrogenase type. (287 aa)    
Predicted Functional Partners:
EDR46972.1
Hypothetical protein; COG: NOG06495 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.972
EDR46971.1
Hypothetical protein; COG: COG4260 Putative virion core protein (lumpy skin disease virus).
 
  
 0.939
EDR48516.1
Hypothetical protein; KEGG: pho:PHS056 0.0010 DNA-directed RNA polymerase subunit P K03059; COG: NOG06495 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.896
EDR48515.1
Hypothetical protein; COG: COG4260 Putative virion core protein (lumpy skin disease virus); Psort location: Cytoplasmic, score: 8.87.
 
  
 0.852
EDR48510.1
Transcriptional regulator, LuxR family; Psort location: CytoplasmicMembrane, score: 9.75.
  
     0.481
EDR48509.1
ABC transporter, solute-binding protein; COG: COG1653 ABC-type sugar transport system, periplasmic component.
  
     0.431
EDR48507.1
Hypothetical protein; KEGG: afu:AF1515 7.7e-08 signal-transducing histidine kinase; COG: COG4564 Signal transduction histidine kinase; Psort location: CytoplasmicMembrane, score: 9.97.
  
     0.426
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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