STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDR47008.1Cupin domain protein; KEGG: gsu:GSU2364 6.8e-07 mannose-6-phosphate isomerase K01809; COG: COG0662 Mannose-6-phosphate isomerase. (114 aa)    
Predicted Functional Partners:
EDR47852.1
KEGG: tcx:Tcr_1675 1.1e-72 undecaprenyl-phosphate galactosephosphotransferase K03606; COG: COG2148 Sugar transferases involved in lipopolysaccharide synthesis; Psort location: CytoplasmicMembrane, score: 10.00.
  
  
 0.683
EDR47009.1
Glycerate kinase; KEGG: ecc:c3879 1.0e-83 yhaD; glycerate kinase 2 K00865; COG: COG1929 Glycerate kinase; Psort location: Cytoplasmic, score: 8.87; Belongs to the glycerate kinase type-1 family.
 
     0.683
EDR48620.1
Transcriptional regulator, AraC family; KEGG: bce:BC3740 8.0e-11 ADA regulatory protein K00567; COG: COG2207 AraC-type DNA-binding domain-containing proteins; Psort location: Cytoplasmic, score: 9.65.
  
 
 0.646
EDR47007.1
Hypothetical protein; COG: COG1598 Uncharacterized conserved protein; Psort location: Cytoplasmic, score: 8.87.
       0.506
EDR45525.1
NAD dependent epimerase/dehydratase family protein; KEGG: vfi:VF0192 9.7e-63 UDP-2-acetamido-2,6-dideoxy-beta-L-talose 4-dehydrogenase K00100; COG: COG0451 Nucleoside-diphosphate-sugar epimerases; Psort location: Cytoplasmic, score: 8.87.
  
  
 0.477
rlmH
rRNA large subunit m3Psi methyltransferase RlmH; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA; Belongs to the RNA methyltransferase RlmH family.
       0.422
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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