STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDR47044.1Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.75. (86 aa)    
Predicted Functional Partners:
mreD
Rod shape-determining protein MreD; COG: NOG16883 non supervised orthologous group; Psort location: CytoplasmicMembrane, score: 9.99.
 
     0.771
radC
COG: COG2003 DNA repair proteins; Psort location: Cytoplasmic, score: 8.87; Belongs to the UPF0758 family.
       0.723
mreC
Rod shape-determining protein MreC; Involved in formation and maintenance of cell shape.
       0.693
EDR47049.1
Penicillin-binding protein, transpeptidase domain protein; KEGG: sde:Sde_3341 9.2e-54 PAS/PAC sensor signal transduction histidine kinase K05364; COG: COG0768 Cell division protein FtsI/penicillin-binding protein 2; Psort location: CytoplasmicMembrane, score: 9.82.
       0.693
EDR47046.1
Cell shape determining protein, MreB/Mrl family; KEGG: hpa:HPAG1_1318 8.1e-43 rod shape-determining protein K01529; COG: COG1077 Actin-like ATPase involved in cell morphogenesis; Psort location: Cytoplasmic, score: 9.98.
       0.644
EDR47520.1
Hypothetical protein; KEGG: ddi:DDB0167703 9.0e-05 hypothetical protein K01971; COG: NOG12748 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
  
     0.598
minD
KEGG: pen:PSEEN1445 1.8e-61 minD; septum site-determining protein MinD; COG: COG2894 Septum formation inhibitor-activating ATPase; Psort location: Cytoplasmic, score: 8.87.
       0.542
EDR47043.1
Pyridine nucleotide-disulfide oxidoreductase; KEGG: gox:GOX1630 1.4e-68 putative oxidoreductase K00100; COG: COG2509 Uncharacterized FAD-dependent dehydrogenases.
       0.533
EDR47037.1
ABC transporter, solute-binding protein; COG: COG1653 ABC-type sugar transport system, periplasmic component.
 
    0.524
EDR47051.1
Putative cell division topological specificity factor MinE; Psort location: Cytoplasmic, score: 8.87.
 
     0.520
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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