STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDR47089.1Polysaccharide deacetylase; KEGG: spd:SPD_1309 5.0e-42 pgdA; peptidoglycan GlcNAc deacetylase K01463; COG: COG0726 Predicted xylanase/chitin deacetylase; Psort location: Cytoplasmic, score: 9.65. (652 aa)    
Predicted Functional Partners:
EDR47850.1
Glycosyltransferase, group 2 family protein; KEGG: stm:STM2085 7.9e-52 rfbN; LPS side chain defect: rhamnosyl transferase K00754; COG: COG0463 Glycosyltransferases involved in cell wall biogenesis; Psort location: Cytoplasmic, score: 8.87.
  
 
 0.653
EDR45539.1
Glycosyltransferase, group 2 family protein; KEGG: hit:NTHI2002 7.6e-47 lsgF; putative UDP-galactose--lipooligosaccharide galactosyltransferase; COG: COG0463 Glycosyltransferases involved in cell wall biogenesis; Psort location: Cytoplasmic, score: 8.87.
  
 
 0.653
EDR47090.1
Hypothetical protein.
       0.500
EDR47088.1
HDIG domain protein; COG: COG2316 Predicted hydrolase (HD superfamily); Psort location: Cytoplasmic, score: 8.87.
       0.479
hisE
phosphoribosyl-ATP diphosphatase; KEGG: sao:SAOUHSC_03008 4.1e-55 imidazole glycerol phosphate synthase subunit HisF, putative K01663; COG: COG0139 Phosphoribosyl-AMP cyclohydrolase; Psort location: Cytoplasmic, score: 9.98; In the C-terminal section; belongs to the PRA-PH family.
       0.408
EDR47510.1
Hypothetical protein; KEGG: nme:NMB0700 1.4e-14 IgA-specific serine endopeptidase K01347; COG: COG1340 Uncharacterized archaeal coiled-coil protein; Psort location: Extracellular, score: 7.62.
  
 
 0.405
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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