STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
patBCystathionine beta-lyase PatB; KEGG: oih:OB2338 1.1e-70 aminotransferase K00842; COG: COG1168 Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities. (406 aa)    
Predicted Functional Partners:
steT
Serine/threonine exchanger SteT; KEGG: eci:UTI89_C0120 4.0e-12 aroP; aromatic amino acid transport protein AroP K03293; COG: COG0531 Amino acid transporters; Psort location: CytoplasmicMembrane, score: 10.00.
 
     0.771
EDR48510.1
Transcriptional regulator, LuxR family; Psort location: CytoplasmicMembrane, score: 9.75.
    
   0.755
EDR47158.1
Transcriptional regulator, GntR family; KEGG: reh:H16_B1289 1.0e-08 phnF; regulator of phosphonate operon, GntR-family; COG: COG2186 Transcriptional regulators; Psort location: Cytoplasmic, score: 8.87.
 
     0.489
EDR47153.1
4Fe-4S binding domain protein; KEGG: ecp:ECP_0909 5.0e-27 anaerobic dimethyl sulfoxide reductase, subunit B K07307; COG: COG0437 Fe-S-cluster-containing hydrogenase components 1; Psort location: CytoplasmicMembrane, score: 9.49.
       0.480
EDR47154.1
KEGG: afu:AF1203 1.7e-74 molybdopterin oxidoreductase, molybdopterin binding subunit K00183; COG: COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; Psort location: Cytoplasmic, score: 8.87; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
       0.480
EDR47155.1
Pyridine nucleotide-disulfide oxidoreductase; KEGG: tma:TM0395 2.2e-49 NADH oxidase, putative K00359; COG: COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases; Psort location: Cytoplasmic, score: 9.98.
       0.480
EDR47151.1
Putative endoribonuclease L-PSP; KEGG: ape:APE_1501.1 4.0e-25 ribonuclease UK114; COG: COG0251 Putative translation initiation inhibitor, yjgF family; Psort location: Cytoplasmic, score: 8.87.
       0.457
EDR47152.1
Putative membrane protein; COG: COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily; Psort location: CytoplasmicMembrane, score: 9.99.
       0.441
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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