STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDR47179.1KEGG: ava:Ava_4051 2.6e-11 nitrogenase MoFe cofactor biosynthesis protein NifE K00531; COG: COG2710 Nitrogenase molybdenum-iron protein, alpha and beta chains; Psort location: Cytoplasmic, score: 8.87. (454 aa)    
Predicted Functional Partners:
EDR47181.1
Putative nitrogenase iron protein; KEGG: swo:Swol_0408 3.4e-76 nitrogenase K00531; COG: COG1348 Nitrogenase subunit NifH (ATPase); Psort location: Cytoplasmic, score: 8.87; Belongs to the NifH/BchL/ChlL family.
 
 
 0.984
EDR47178.1
Hypothetical protein; KEGG: zmo:ZMO1826 6.2e-05 nifE; nitrogenase FeMo cofactor synthesis protein K02587; COG: COG2710 Nitrogenase molybdenum-iron protein, alpha and beta chains; Psort location: Cytoplasmic, score: 8.87.
     0.982
EDR47172.1
Putative nitrogenase iron protein; KEGG: mhu:Mhun_0793 3.3e-62 nitrogenase K00531; COG: COG1348 Nitrogenase subunit NifH (ATPase); Psort location: Cytoplasmic, score: 8.87; Belongs to the NifH/BchL/ChlL family.
 
 
 0.969
hypC
Hydrogenase assembly chaperone HypC/HupF; COG: COG0298 Hydrogenase maturation factor; Psort location: Cytoplasmic, score: 8.87.
 
     0.921
EDR47170.1
KEGG: dvu:DVUA0012 4.2e-09 nifD; nitrogenase molybdenum-iron protein alpha chain K02586; COG: COG2710 Nitrogenase molybdenum-iron protein, alpha and beta chains; Psort location: Cytoplasmic, score: 8.87.
     0.908
hypF
Carbamoyltransferase HypF; KEGG: ser:SERP0974 1.3e-08 acylphosphatase K01512; COG: COG0068 Hydrogenase maturation factor; Psort location: Cytoplasmic, score: 8.87; Belongs to the carbamoyltransferase HypF family.
 
     0.829
hypD
Hydrogenase expression/formation protein HypD; COG: COG0409 Hydrogenase maturation factor; Psort location: Cytoplasmic, score: 8.87.
 
     0.820
EDR47287.1
Hypothetical protein; KEGG: mth:MTH1563 7.3e-07 NifD; nitrogenase molybdenum-iron protein alpha chain (nitrogenase component I) (dinitrogenase) K02586; COG: COG2710 Nitrogenase molybdenum-iron protein, alpha and beta chains.
     0.797
hypE
KEGG: cch:Cag_0556 7.8e-77 hypE; hydrogenase expression/formation protein HypE K04655; COG: COG0309 Hydrogenase maturation factor; Psort location: Cytoplasmic, score: 8.87.
 
     0.787
EDR47173.1
Putative iron-only hydrogenase system regulator; COG: NOG17852 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
 
     0.691
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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