STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDR47221.1EDD domain protein, DegV family; COG: COG1307 Uncharacterized protein conserved in bacteria; Psort location: Cytoplasmic, score: 8.87. (291 aa)    
Predicted Functional Partners:
EDR47111.1
DAK2 domain fusion protein YloV; KEGG: bcz:BCZK3615 7.4e-120 dhaK; possible dihydroxyacetone-related kinase K00863; COG: COG1461 Predicted kinase related to dihydroxyacetone kinase; Psort location: Cytoplasmic, score: 8.87.
   0.952
EDR47112.1
COG: COG1302 Uncharacterized protein conserved in bacteria; Psort location: Cytoplasmic, score: 8.87.
 
     0.564
EDR46516.1
Hypothetical protein; KEGG: bcz:BCZK3615 5.0e-06 dhaK; possible dihydroxyacetone-related kinase K00863; COG: COG1461 Predicted kinase related to dihydroxyacetone kinase; Psort location: Cytoplasmic, score: 8.87.
 
   0.505
EDR48341.1
Hypothetical protein; KEGG: bcz:BCZK3615 1.9e-06 dhaK; possible dihydroxyacetone-related kinase K00863; COG: COG1461 Predicted kinase related to dihydroxyacetone kinase; Psort location: Cytoplasmic, score: 8.87.
 
   0.498
EDR47222.1
Hypothetical protein; COG: NOG05963 non supervised orthologous group; Psort location: CytoplasmicMembrane, score: 9.26.
       0.432
infC
Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.
  
    0.419
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.