STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDR47241.1Hypothetical protein; COG: NOG16856 non supervised orthologous group. (116 aa)    
Predicted Functional Partners:
EDR46591.1
LysM domain protein; COG: COG1388 FOG: LysM repeat; Psort location: Cytoplasmic, score: 8.87.
  
     0.684
EDR48390.1
Putative phage head-tail adaptor; KEGG: cpf:CPF_2369 4.4e-67 subtilase family protein; COG: COG1404 Subtilisin-like serine proteases.
  
     0.679
EDR46310.1
LysM domain protein; KEGG: lsl:LSL_0304 0.00017 phage lysin K01185; COG: COG1652 Uncharacterized protein containing LysM domain.
  
     0.670
thrS
threonine--tRNA ligase; Catalyzes the attachment of threonine to tRNA(Thr) in a two- step reaction: L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr).
       0.660
EDR46846.1
Peptidase, S8/S53 family; KEGG: cpf:CPF_2369 2.9e-54 subtilase family protein; COG: COG1404 Subtilisin-like serine proteases; Psort location: Cytoplasmic, score: 8.87.
  
     0.659
EDR48008.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.645
EDR47243.1
acyl-CoA thioester hydrolase, YbgC/YbaW family; KEGG: lwe:lwe1298 9.9e-22 4-hydroxybenzoyl-CoA thioesterase family protein K01076; COG: COG0824 Predicted thioesterase; Psort location: Cytoplasmic, score: 8.87.
       0.642
EDR47024.1
Hypothetical protein.
  
     0.641
EDR48006.1
Hypothetical protein.
  
     0.632
EDR47520.1
Hypothetical protein; KEGG: ddi:DDB0167703 9.0e-05 hypothetical protein K01971; COG: NOG12748 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
  
     0.621
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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