Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EDR46572.1Hypothetical protein; KEGG: aae:aq_206 3.6e-05 nirB; nitrite reductase (NAD(P)H) large subunit K00362; COG: NOG22582 non supervised orthologous group. (52 aa)    
Predicted Functional Partners:
hemC
Hydroxymethylbilane synthase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps.
  
  
 0.631
cobA
uroporphyrinogen-III C-methyltransferase; KEGG: cno:NT01CX_0261 1.5e-89 uroporphyrinogen III synthase/methyltransferase K00589; COG: COG1587 Uroporphyrinogen-III synthase; Psort location: Cytoplasmic, score: 8.87.
  
  
 0.631
EDR47706.1
Rubredoxin; KEGG: sat:SYN_02123 1.3e-44 ferric-chelate reductase / rubredoxin K00521; COG: COG1773 Rubredoxin.
  
 
 0.617
hcp
Hydroxylamine reductase; Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O.
  
  
 0.571
EDR48430.1
Rubredoxin; KEGG: sat:SYN_02123 3.8e-13 ferric-chelate reductase / rubredoxin K00521; COG: COG1773 Rubredoxin; Psort location: Cytoplasmic, score: 9.98; Belongs to the rubredoxin family.
  
 
 0.569
EDR47153.1
4Fe-4S binding domain protein; KEGG: ecp:ECP_0909 5.0e-27 anaerobic dimethyl sulfoxide reductase, subunit B K07307; COG: COG0437 Fe-S-cluster-containing hydrogenase components 1; Psort location: CytoplasmicMembrane, score: 9.49.
   
 
 0.517
EDR45683.1
4Fe-4S binding domain protein; KEGG: ecp:ECP_0909 5.9e-24 anaerobic dimethyl sulfoxide reductase, subunit B K07307; COG: COG0437 Fe-S-cluster-containing hydrogenase components 1; Psort location: CytoplasmicMembrane, score: 9.49.
   
 
 0.517
EDR46570.1
Transcriptional regulator, MerR family; KEGG: eci:UTI89_C3737 1.8e-06 yhdM; Zn(II)-responsive regulator of ZntA; COG: COG0789 Predicted transcriptional regulators.
       0.477
EDR46571.1
Putative 1-deoxy-D-xylulose-5-phosphate synthase; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily.
       0.477
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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