Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDR46593.1FCD domain protein; KEGG: msm:MSMEG_3400 7.2e-15 glutamyl-tRNA(Gln) amidotransferase subunit A K01957; COG: COG1802 Transcriptional regulators; Psort location: Cytoplasmic, score: 8.87. (226 aa)    
Predicted Functional Partners:
EDR45773.1
FCD domain protein; COG: COG2186 Transcriptional regulators; Psort location: Cytoplasmic, score: 8.87.
  
  
 0.790
ispE
4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol.
       0.785
EDR46591.1
LysM domain protein; COG: COG1388 FOG: LysM repeat; Psort location: Cytoplasmic, score: 8.87.
       0.646
EDR46590.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.579
spoIIR
Stage II sporulation protein R; COG: NOG13215 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
       0.562
EDR46595.1
Cation diffusion facilitator family transporter; KEGG: mja:MJ0449 6.6e-32 cation efflux system protein K01529; COG: COG0053 Predicted Co/Zn/Cd cation transporters; Psort location: CytoplasmicMembrane, score: 7.63; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family.
       0.539
EDR46596.1
Acyl-ACP thioesterase; KEGG: ctc:CTC00119 2.2e-26 acyl-acyl carrier protein thioesterase K01071; COG: COG3884 Acyl-ACP thioesterase; Psort location: Cytoplasmic, score: 8.87.
       0.539
EDR46597.1
S1 RNA binding domain protein; COG: COG2996 Uncharacterized protein conserved in bacteria; Psort location: Cytoplasmic, score: 8.87; Belongs to the CvfB family.
       0.426
malQ-2
4-alpha-glucanotransferase; KEGG: ava:Ava_1822 4.7e-134 glycoside hydrolase, family 77 K00705; COG: COG1640 4-alpha-glucanotransferase; Psort location: Cytoplasmic, score: 9.98.
       0.401
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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