STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDR46605.1Oligopeptide transporter, OPT family; COG: COG1297 Predicted membrane protein; Psort location: CytoplasmicMembrane, score: 9.99. (633 aa)    
Predicted Functional Partners:
EDR46606.1
Hypothetical protein; COG: NOG20192 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
 
     0.960
atpB
ATP synthase F0, A subunit; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane. Belongs to the ATPase A chain family.
   
    0.512
cdsA
KEGG: ctc:CTC01266 9.7e-47 phosphatidate cytidylyltransferase K00981; COG: COG0575 CDP-diglyceride synthetase; Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the CDS family.
   
    0.420
tig-2
Trigger factor; KEGG: lsl:LSL_0643 3.0e-43 tig; trigger factor, ppiase K01802; COG: COG0544 FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor).
       0.406
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.