STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDR46622.1Aminopeptidase I zinc metalloprotease (M18); KEGG: cno:NT01CX_1346 1.9e-73 aspartyl aminopeptidase K01269; COG: COG1362 Aspartyl aminopeptidase; Psort location: Cytoplasmic, score: 8.87. (427 aa)    
Predicted Functional Partners:
EDR46619.1
ABC transporter, permease protein; COG: COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; Psort location: CytoplasmicMembrane, score: 10.00.
       0.773
EDR46620.1
ABC transporter, ATP-binding protein; KEGG: bur:Bcep18194_B1868 1.6e-55 ABC dipeptide/oligopeptide/nickel family transporter, ATPase subunit K02031:K02032; COG: COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49.
       0.773
EDR46621.1
KEGG: cch:Cag_1705 1.0e-51 oligopeptide/dipeptide ABC transporter, ATP-binding protein-like K02032; COG: COG4608 ABC-type oligopeptide transport system, ATPase component; Psort location: CytoplasmicMembrane, score: 9.49.
       0.773
EDR46618.1
KEGG: rha:RHA1_ro09047 2.9e-38 ABC peptide transporter, permease component K02033; COG: COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; Psort location: CytoplasmicMembrane, score: 10.00.
       0.762
EDR46623.1
Aminotransferase, class I/II; KEGG: ctc:CTC00825 5.6e-67 putative aspartate aminotransferase K00842; COG: COG1168 Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities; Psort location: Cytoplasmic, score: 8.87.
       0.741
EDR46617.1
ABC transporter, substrate-binding protein, family 5; KEGG: shn:Shewana3_2650 2.0e-21 acetate kinase K00925; COG: COG0747 ABC-type dipeptide transport system, periplasmic component; Psort location: Cellwall, score: 9.18.
       0.492
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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