Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EDR46639.1DNA-binding helix-turn-helix protein; COG: COG1396 Predicted transcriptional regulators; Psort location: Cytoplasmic, score: 8.87. (105 aa)    
Predicted Functional Partners:
EDR46690.1
Hypothetical protein; KEGG: sab:SAB1265c 1.1e-11 probable nitric oxide reductase protein K00377; COG: COG4548 Nitric oxide reductase activation protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.709
EDR46688.1
KEGG: nmu:Nmul_A1253 1.2e-05 von Willebrand factor, type A K02448; COG: COG4548 Nitric oxide reductase activation protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.699
EDR46714.1
Transglycosylase SLT domain protein; COG: COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains).
  
     0.582
EDR46734.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.580
EDR46728.1
COG: COG0539 Ribosomal protein S1; Psort location: Cytoplasmic, score: 8.87.
  
     0.566
EDR46686.1
Transcriptional regulator, AbrB family; COG: COG2002 Regulators of stationary/sporulation gene expression; Psort location: Cytoplasmic, score: 8.87.
  
     0.562
EDR46712.1
Hypothetical protein; KEGG: ddi:DDB0167703 5.1e-05 hypothetical protein K01971; COG: COG3451 Type IV secretory pathway, VirB4 components.
  
     0.533
EDR46729.1
TraG/TraD family protein; COG: COG3505 Type IV secretory pathway, VirD4 components.
  
     0.529
EDR46640.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.503
EDR46643.1
YqaJ viral recombinase family protein; KEGG: cal:orf19.3100 0.0076 USO4; coiled-coil protein necessary for protein transport from ER to Golgi K01553; COG: COG5377 Phage-related protein, predicted endonuclease; Psort location: Cytoplasmic, score: 8.87.
 
     0.466
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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