Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDR46640.1Hypothetical protein; Psort location: Cytoplasmic, score: 8.87. (64 aa)    
Predicted Functional Partners:
EDR46639.1
DNA-binding helix-turn-helix protein; COG: COG1396 Predicted transcriptional regulators; Psort location: Cytoplasmic, score: 8.87.
       0.503
EDR46641.1
Hypothetical protein.
       0.451
EDR46642.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.451
EDR46643.1
YqaJ viral recombinase family protein; KEGG: cal:orf19.3100 0.0076 USO4; coiled-coil protein necessary for protein transport from ER to Golgi K01553; COG: COG5377 Phage-related protein, predicted endonuclease; Psort location: Cytoplasmic, score: 8.87.
       0.451
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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