STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDR46643.1YqaJ viral recombinase family protein; KEGG: cal:orf19.3100 0.0076 USO4; coiled-coil protein necessary for protein transport from ER to Golgi K01553; COG: COG5377 Phage-related protein, predicted endonuclease; Psort location: Cytoplasmic, score: 8.87. (352 aa)    
Predicted Functional Partners:
EDR46646.1
Hypothetical protein; KEGG: spd:SPD_0957 6.9e-09 dnaG; DNA primase; COG: COG0358 DNA primase (bacterial type); Psort location: Cytoplasmic, score: 8.87.
 
     0.854
EDR46642.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.798
EDR46641.1
Hypothetical protein.
       0.773
EDR46707.1
Hypothetical protein; COG: NOG19595 non supervised orthologous group.
 
     0.766
EDR46728.1
COG: COG0539 Ribosomal protein S1; Psort location: Cytoplasmic, score: 8.87.
  
     0.759
EDR46734.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.743
EDR46712.1
Hypothetical protein; KEGG: ddi:DDB0167703 5.1e-05 hypothetical protein K01971; COG: COG3451 Type IV secretory pathway, VirB4 components.
  
     0.727
recD2-2
Helicase, RecD/TraA family; DNA-dependent ATPase and ATP-dependent 5'-3' DNA helicase. Has no activity on blunt DNA or DNA with 3'-overhangs, requires at least 10 bases of 5'-ssDNA for helicase activity; Belongs to the RecD family. RecD-like subfamily.
 
     0.690
EDR45977.1
Tetratricopeptide repeat protein; KEGG: eci:UTI89_C2868 4.9e-21 yphG; hypothetical protein YphG K00754; COG: NOG06209 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
  
     0.669
EDR46729.1
TraG/TraD family protein; COG: COG3505 Type IV secretory pathway, VirD4 components.
  
     0.644
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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