STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
srtB-2Sortase, SrtB family; COG: COG4509 Uncharacterized protein conserved in bacteria. (260 aa)    
Predicted Functional Partners:
EDR46646.1
Hypothetical protein; KEGG: spd:SPD_0957 6.9e-09 dnaG; DNA primase; COG: COG0358 DNA primase (bacterial type); Psort location: Cytoplasmic, score: 8.87.
 
     0.801
EDR46648.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.664
EDR46645.1
Putative phage head-tail adaptor.
       0.603
EDR48377.1
Efflux ABC transporter, permease protein; KEGG: chu:CHU_0040 6.0e-09 ATPase involved in DNA repair K03546; COG: COG0577 ABC-type antimicrobial peptide transport system, permease component.
  
     0.463
nrdD
KEGG: cvi:CV2412 1.3e-115 nrdD; anaerobic ribonucleoside triphosphate reductase K00527; COG: COG1328 Oxygen-sensitive ribonucleoside-triphosphate reductase; Psort location: Cytoplasmic, score: 8.87.
  
     0.447
recD2-2
Helicase, RecD/TraA family; DNA-dependent ATPase and ATP-dependent 5'-3' DNA helicase. Has no activity on blunt DNA or DNA with 3'-overhangs, requires at least 10 bases of 5'-ssDNA for helicase activity; Belongs to the RecD family. RecD-like subfamily.
       0.438
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.