STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDR46669.1Hypothetical protein; COG: COG1373 Predicted ATPase (AAA+ superfamily); Psort location: Cytoplasmic, score: 8.87. (454 aa)    
Predicted Functional Partners:
EDR46235.1
Hypothetical protein; COG: COG1373 Predicted ATPase (AAA+ superfamily); Psort location: Cytoplasmic, score: 8.87.
  
     0.659
EDR46714.1
Transglycosylase SLT domain protein; COG: COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains).
  
     0.649
EDR46686.1
Transcriptional regulator, AbrB family; COG: COG2002 Regulators of stationary/sporulation gene expression; Psort location: Cytoplasmic, score: 8.87.
  
     0.646
EDR46657.1
DNA-binding helix-turn-helix protein; KEGG: rfr:Rfer_0219 0.00019 transcriptional regulator, XRE family with shikimate kinase activity K00891; COG: NOG36102 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
  
     0.620
EDR46671.1
Hypothetical protein; KEGG: vpa:VPA0006 1.1e-17 GTP cyclohydrolase II K01497; COG: COG3236 Uncharacterized protein conserved in bacteria; Psort location: Cytoplasmic, score: 8.87.
 
     0.611
EDR46696.1
Hypothetical protein; COG: COG1277 ABC-type transport system involved in multi-copper enzyme maturation, permease component; Psort location: CytoplasmicMembrane, score: 9.99.
  
     0.610
EDR47337.1
Von Willebrand factor type A domain protein; KEGG: cal:orf19.1648 0.00031 RAD50; DNA repair protein K01553; COG: COG2304 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain.
  
     0.603
EDR48179.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.26.
  
     0.590
ligA-2
DNA ligase (NAD+); DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA.
 
     0.585
pnuC
COG: COG3201 Nicotinamide mononucleotide transporter; Psort location: CytoplasmicMembrane, score: 9.99.
  
     0.580
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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