STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDR46670.1Hypothetical protein. (157 aa)    
Predicted Functional Partners:
EDR48140.1
Hypothetical protein; KEGG: bca:BCE_0840 6.5e-16 type I restriction-modification system, R subunit K01153; COG: COG4096 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases; Psort location: Cytoplasmic, score: 8.87.
  
 
 0.846
EDR46671.1
Hypothetical protein; KEGG: vpa:VPA0006 1.1e-17 GTP cyclohydrolase II K01497; COG: COG3236 Uncharacterized protein conserved in bacteria; Psort location: Cytoplasmic, score: 8.87.
       0.730
EDR48452.1
COG: COG3943 Virulence protein; Psort location: Cytoplasmic, score: 8.87.
  
    0.718
ligA-2
DNA ligase (NAD+); DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA.
     
 0.646
EDR46669.1
Hypothetical protein; COG: COG1373 Predicted ATPase (AAA+ superfamily); Psort location: Cytoplasmic, score: 8.87.
       0.568
EDR45509.1
Hypothetical protein; COG: COG1106 Predicted ATPases; Psort location: Cytoplasmic, score: 8.87.
  
    0.507
EDR46752.1
COG: COG1715 Restriction endonuclease; Psort location: Cytoplasmic, score: 8.87.
  
  
 0.500
guaA
GMP synthase (glutamine-hydrolyzing) domain protein; Catalyzes the synthesis of GMP from XMP.
     
 0.481
FbpA
COG: COG1293 Predicted RNA-binding protein homologous to eukaryotic snRNP; Psort location: Cytoplasmic, score: 8.87.
  
    0.437
EDR48450.1
KEGG: hpa:HPAG1_1053 7.8e-26 excinuclease ABC subunit B; COG: COG0556 Helicase subunit of the DNA excision repair complex.
    
   0.425
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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