STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDR46713.1Hypothetical protein. (219 aa)    
Predicted Functional Partners:
EDR46712.1
Hypothetical protein; KEGG: ddi:DDB0167703 5.1e-05 hypothetical protein K01971; COG: COG3451 Type IV secretory pathway, VirB4 components.
       0.781
EDR46714.1
Transglycosylase SLT domain protein; COG: COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains).
       0.781
EDR46715.1
Hypothetical protein; COG: KOG3544 Collagens (type IV and type XIII), and related proteins; Psort location: CytoplasmicMembrane, score: 9.26.
       0.781
EDR46716.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.99.
       0.748
EDR46717.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.26.
       0.705
EDR46711.1
KEGG: ljo:LJ1840 0.0020 cell wall-associated serine proteinase K01361; COG: COG4932 Predicted outer membrane protein; Psort location: Cellwall, score: 9.25.
       0.533
EDR46718.1
Hypothetical protein.
       0.419
EDR46719.1
DNA-binding helix-turn-helix protein; KEGG: afu:AF2118 0.0047 guaB-2; IMP dehydrogenase K00088; COG: COG1396 Predicted transcriptional regulators; Psort location: Cytoplasmic, score: 8.87.
       0.419
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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