Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDR46745.1Hypothetical protein; KEGG: cal:orf19.2684 1.2e-06 SLK192; conserved coiled-coil protein K00870; COG: KOG4809 Rab6 GTPase-interacting protein involved in endosome-to-TGN transport; Psort location: Cytoplasmic, score: 8.87. (229 aa)    
Predicted Functional Partners:
EDR46744.1
Putative plasmid recombination enzyme.
 
     0.875
EDR46741.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
 
     0.753
EDR46739.1
Hypothetical protein; Psort location: Extracellular, score: 8.82.
 
     0.674
EDR46740.1
Site-specific recombinase, phage integrase family; COG: COG0582 Integrase; Psort location: Cytoplasmic, score: 8.87; Belongs to the 'phage' integrase family.
 
     0.668
EDR46738.1
DNA-binding helix-turn-helix protein; Psort location: Cytoplasmic, score: 8.87.
 
    0.643
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
   
    0.516
EDR46743.1
Hypothetical protein.
       0.508
EDR46758.1
Hypothetical protein.
  
    0.486
EDR45490.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.455
EDR46707.1
Hypothetical protein; COG: NOG19595 non supervised orthologous group.
  
     0.401
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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