STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDR46765.1Hypothetical protein. (124 aa)    
Predicted Functional Partners:
EDR46764.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
    0.776
EDR46110.1
Hypothetical protein.
  
     0.602
EDR46763.1
Hypothetical protein; COG: COG1609 Transcriptional regulators.
       0.565
EDR46766.1
DNA-binding helix-turn-helix protein; COG: COG1396 Predicted transcriptional regulators; Psort location: CytoplasmicMembrane, score: 9.26.
       0.481
EDR45406.1
Sigma-70, region 4; Psort location: Cytoplasmic, score: 8.87.
  
     0.420
EDR45405.1
RNA polymerase sigma factor, sigma-70 family; Psort location: Cytoplasmic, score: 8.87.
  
    0.410
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.