STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDR46767.1DNA-binding helix-turn-helix protein; COG: NOG16841 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87. (351 aa)    
Predicted Functional Partners:
EDR46766.1
DNA-binding helix-turn-helix protein; COG: COG1396 Predicted transcriptional regulators; Psort location: CytoplasmicMembrane, score: 9.26.
 
     0.852
EDR46047.1
Hypothetical protein; KEGG: wol:WD0969 0.00022 NADH dehydrogenase I, N subunit, putative K00343; COG: COG1277 ABC-type transport system involved in multi-copper enzyme maturation, permease component; Psort location: CytoplasmicMembrane, score: 9.99.
  
     0.655
EDR45742.1
DNA-binding helix-turn-helix protein; KEGG: mmo:MMOB3450 0.00063 dam; adenine-specific DNA methyltransferase K06223; COG: COG1396 Predicted transcriptional regulators.
  
     0.534
EDR46417.1
Hypothetical protein; COG: NOG14070 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
  
     0.529
EDR46769.1
Prevent-host-death family protein; Antitoxin component of a type II toxin-antitoxin (TA) system.
       0.496
EDR46770.1
Addiction module toxin, RelE/StbE family; Psort location: Cytoplasmic, score: 8.87.
       0.496
EDR45645.1
Transporter, major facilitator family protein; KEGG: rpa:RPA4180 0.00088 pntB; nicotinamide nucleotide transhydrogenase, subunit beta K00325; COG: COG0477 Permeases of the major facilitator superfamily; Psort location: CytoplasmicMembrane, score: 10.00.
  
     0.484
EDR45374.1
Hypothetical protein; COG: COG1396 Predicted transcriptional regulators; Psort location: CytoplasmicMembrane, score: 9.99.
  
     0.459
EDR48614.1
Transcriptional regulator, TetR family; COG: COG1309 Transcriptional regulator; Psort location: Cytoplasmic, score: 8.87.
  
     0.412
EDR45745.1
COG: COG4194 Predicted membrane protein; Psort location: CytoplasmicMembrane, score: 9.99.
  
     0.407
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
Server load: medium (76%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.