STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDR46774.1HAD hydrolase, family IA, variant 3; KEGG: vfi:VFA0937 1.4e-24 phosphoglycolate phosphatase K01091; COG: COG0637 Predicted phosphatase/phosphohexomutase; Psort location: Cytoplasmic, score: 8.87. (216 aa)    
Predicted Functional Partners:
EDR46775.1
Hypothetical protein; COG: NOG21159 non supervised orthologous group; Psort location: CytoplasmicMembrane, score: 9.99.
       0.727
EDR46776.1
Hydantoinase/oxoprolinase; KEGG: nph:NP6218A 3.6e-29 hyuA_2; N-methylhydantoinase (ATP-hydrolyzing) A 2 K01473; COG: COG0145 N-methylhydantoinase A/acetone carboxylase, beta subunit; Psort location: Cytoplasmic, score: 8.87.
       0.690
dlgD
3-dehydro-L-gulonate 2-dehydrogenase; KEGG: ecc:c4396 3.3e-78 yiaK; hypothetical oxidoreductase yiaK K08092; COG: COG2055 Malate/L-lactate dehydrogenases; Belongs to the LDH2/MDH2 oxidoreductase family.
       0.661
EDR46777.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.559
EDR46778.1
YhcH/YjgK/YiaL family protein; COG: COG2731 Beta-galactosidase, beta subunit; Psort location: Cytoplasmic, score: 8.87.
       0.519
uxuA
Mannonate dehydratase; Catalyzes the dehydration of D-mannonate.
       0.441
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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