STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDR46778.1YhcH/YjgK/YiaL family protein; COG: COG2731 Beta-galactosidase, beta subunit; Psort location: Cytoplasmic, score: 8.87. (152 aa)    
Predicted Functional Partners:
EDR46777.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
 
     0.863
EDR46775.1
Hypothetical protein; COG: NOG21159 non supervised orthologous group; Psort location: CytoplasmicMembrane, score: 9.99.
 
     0.748
EDR46776.1
Hydantoinase/oxoprolinase; KEGG: nph:NP6218A 3.6e-29 hyuA_2; N-methylhydantoinase (ATP-hydrolyzing) A 2 K01473; COG: COG0145 N-methylhydantoinase A/acetone carboxylase, beta subunit; Psort location: Cytoplasmic, score: 8.87.
 
     0.728
EDR48621.1
KEGG: cpr:CPR_0750 2.5e-231 beta-galactosidase K01190; COG: COG3250 Beta-galactosidase/beta-glucuronidase; Psort location: Cytoplasmic, score: 8.87.
   
  0.627
EDR46314.1
Glycosyl hydrolase family 2, sugar binding domain protein; KEGG: rba:RB3405 1.1e-102 putative hydrolase K01190; COG: COG3250 Beta-galactosidase/beta-glucuronidase; Psort location: Cytoplasmic, score: 8.87; Belongs to the glycosyl hydrolase 2 family.
   
  0.627
uxuA
Mannonate dehydratase; Catalyzes the dehydration of D-mannonate.
       0.624
dlgD
3-dehydro-L-gulonate 2-dehydrogenase; KEGG: ecc:c4396 3.3e-78 yiaK; hypothetical oxidoreductase yiaK K08092; COG: COG2055 Malate/L-lactate dehydrogenases; Belongs to the LDH2/MDH2 oxidoreductase family.
 
    0.586
EDR48215.1
ROK family protein; KEGG: spa:M6_Spy0250 1.6e-92 N-acetylmannosamine kinase K00885; COG: COG1940 Transcriptional regulator/sugar kinase; Psort location: Cytoplasmic, score: 9.98.
 
 
  0.579
EDR48212.1
KEGG: lsa:LSA1640 3.1e-121 nanA; N-acetylneuraminate lyase K01639; COG: COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.572
EDR46774.1
HAD hydrolase, family IA, variant 3; KEGG: vfi:VFA0937 1.4e-24 phosphoglycolate phosphatase K01091; COG: COG0637 Predicted phosphatase/phosphohexomutase; Psort location: Cytoplasmic, score: 8.87.
       0.519
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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