STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDR46828.1DNA-binding helix-turn-helix protein; COG: NOG21982 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87. (279 aa)    
Predicted Functional Partners:
EDR46830.1
Replication initiation factor; COG: COG2946 Putative phage replication protein RstA; Psort location: Cytoplasmic, score: 8.87.
 
     0.829
EDR46832.1
Site-specific recombinase, phage integrase family; COG: COG0582 Integrase; Psort location: Cytoplasmic, score: 8.87; Belongs to the 'phage' integrase family.
 
     0.798
EDR46375.1
Replication initiation factor; COG: COG2946 Putative phage replication protein RstA; Psort location: Cytoplasmic, score: 8.87.
  
     0.751
EDR45659.1
Replication initiation factor; COG: COG2946 Putative phage replication protein RstA; Psort location: Cytoplasmic, score: 8.87.
  
     0.522
EDR47879.1
N-acetylmuramoyl-L-alanine amidase; KEGG: spn:SP_0965 1.9e-44 endo-beta-N-acetylglucosaminidase K01227; COG: COG5263 FOG: Glucan-binding domain (YG repeat); Psort location: Extracellular, score: 8.10.
  
     0.457
EDR46148.1
DNA binding domain, excisionase family.
 
   
 0.453
EDR48581.1
Hypothetical protein; COG: NOG33329 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
  
     0.450
EDR46829.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.447
EDR46879.1
Hypothetical protein.
  
     0.428
EDR46886.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.423
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.