Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
EDR46830.1Replication initiation factor; COG: COG2946 Putative phage replication protein RstA; Psort location: Cytoplasmic, score: 8.87. (378 aa)    
Predicted Functional Partners:
EDR46828.1
DNA-binding helix-turn-helix protein; COG: NOG21982 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
 
     0.829
EDR46832.1
Site-specific recombinase, phage integrase family; COG: COG0582 Integrase; Psort location: Cytoplasmic, score: 8.87; Belongs to the 'phage' integrase family.
 
     0.791
EDR46831.1
DNA binding domain, excisionase family.
       0.773
EDR46377.1
DNA-binding helix-turn-helix protein; COG: NOG21982 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
  
     0.759
EDR46479.1
Hypothetical protein; COG: NOG13238 non supervised orthologous group.
 
     0.728
EDR46127.1
Hypothetical protein; COG: NOG13238 non supervised orthologous group; Psort location: CytoplasmicMembrane, score: 9.75.
 
     0.727
EDR46129.1
Hypothetical protein; COG: NOG09588 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
 
     0.699
EDR46122.1
FtsK/SpoIIIE family protein; COG: COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins; Psort location: Cytoplasmic, score: 8.87.
 
    0.625
EDR46481.1
FtsK/SpoIIIE family protein; COG: COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins; Psort location: CytoplasmicMembrane, score: 7.80.
 
    0.606
EDR46120.1
Hypothetical protein; COG: NOG13239 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.588
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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