STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDR46833.1KEGG: bce:BC4687 2.2e-40 N-acetylmuramoyl-L-alanine amidase K01446; COG: COG0860 N-acetylmuramoyl-L-alanine amidase. (289 aa)    
Predicted Functional Partners:
EDR47573.1
KEGG: bsu:BG10825 9.7e-31 cwlC; N-acetylmuramoyl-L-alanine amidase, peptidoglycan hydrolase, LytC amidase family K01448; COG: COG0860 N-acetylmuramoyl-L-alanine amidase; Psort location: Cytoplasmic, score: 8.87.
  
 0.904
EDR46193.1
Peptidase, S54 family; KEGG: eci:UTI89_C0653 3.5e-23 hypothetical protein; COG: COG0705 Uncharacterized membrane protein (homolog of Drosophila rhomboid); Psort location: CytoplasmicMembrane, score: 9.99.
  
   0.892
EDR46175.1
N-acetylmuramoyl-L-alanine amidase; KEGG: ctc:CTC02570 3.1e-34 germination-specific N-acetylmuramoyl-L-alanine amidase K01448; COG: COG0860 N-acetylmuramoyl-L-alanine amidase.
  
  
 
0.822
EDR46834.1
Cof-like hydrolase; KEGG: spb:M28_Spy1372 4.9e-13 peptidyl-prolyl cis-trans isomerase K01802; COG: COG0561 Predicted hydrolases of the HAD superfamily; Psort location: Cytoplasmic, score: 8.87.
 
     0.777
greA-2
Prokaryotic transcription elongation factor, GreA/GreB domain protein; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides.
   
   0.727
EDR46836.1
Hypothetical protein; Psort location: Extracellular, score: 8.82.
       0.697
EDR46711.1
KEGG: ljo:LJ1840 0.0020 cell wall-associated serine proteinase K01361; COG: COG4932 Predicted outer membrane protein; Psort location: Cellwall, score: 9.25.
   
 
  0.553
EDR45757.1
Hypothetical protein; KEGG: ddi:DDB0191487 6.7e-06 kinX; LISK family protein kinase K05743; COG: NOG35986 non supervised orthologous group.
   
 
  0.553
EDR46950.1
Hypothetical protein; KEGG: mmu:246104 0.0091 Rhbdl3; rhomboid, veinlet-like 3 (Drosophila); COG: COG0705 Uncharacterized membrane protein (homolog of Drosophila rhomboid); Psort location: CytoplasmicMembrane, score: 9.99.
  
   0.478
EDR47879.1
N-acetylmuramoyl-L-alanine amidase; KEGG: spn:SP_0965 1.9e-44 endo-beta-N-acetylglucosaminidase K01227; COG: COG5263 FOG: Glucan-binding domain (YG repeat); Psort location: Extracellular, score: 8.10.
  
  
  0.448
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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