STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDR46848.1Phage/plasmid primase, P4 family domain protein; KEGG: hwa:HQ4022A 3.5e-14 putative P4-specific DNA primase; COG: COG3378 Predicted ATPase; Psort location: Cytoplasmic, score: 8.87. (600 aa)    
Predicted Functional Partners:
EDR45720.1
Hypothetical protein; KEGG: pfa:MAL8P1.23 7.0e-14 ubiquitin-protein ligase 1, putative.
  
     0.714
EDR45742.1
DNA-binding helix-turn-helix protein; KEGG: mmo:MMOB3450 0.00063 dam; adenine-specific DNA methyltransferase K06223; COG: COG1396 Predicted transcriptional regulators.
  
     0.706
EDR47341.1
KEGG: ava:Ava_0354 0.0060 protein serine/threonine phosphatase K01090; COG: COG4260 Putative virion core protein (lumpy skin disease virus); Psort location: Cytoplasmic, score: 8.87.
  
     0.621
EDR46847.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
 
     0.595
EDR46849.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
 
     0.570
EDR46903.1
Resolvase, N-terminal domain protein; COG: COG1961 Site-specific recombinases, DNA invertase Pin homologs; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.560
EDR45404.1
Sigma-70, region 4; Psort location: Cytoplasmic, score: 8.87.
  
     0.560
EDR46714.1
Transglycosylase SLT domain protein; COG: COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains).
  
     0.546
EDR47738.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.506
tnpX
TnpX site-specific recombinase; KEGG: rno:309804 0.0023 Cdc2l6_predicted; cell division cycle 2-like 6 (CDK8-like) (predicted) K02208; COG: COG1961 Site-specific recombinases, DNA invertase Pin homologs; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.502
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.