Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDR46856.1Relaxase/mobilization nuclease domain protein; KEGG: xtr:407915 0.0022 ppig; peptidyl-prolyl isomerase G (cyclophilin G) K01802; COG: COG3843 Type IV secretory pathway, VirD2 components (relaxase); Psort location: Cytoplasmic, score: 8.87. (397 aa)    
Predicted Functional Partners:
EDR46855.1
Bacterial mobilization protein MobC; Psort location: Cytoplasmic, score: 8.87.
  
    0.788
EDR46857.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.99.
       0.773
EDR46858.1
Hypothetical protein.
       0.746
EDR46868.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
    0.724
EDR46849.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.607
EDR46946.1
Protein TraX; COG: NOG14154 non supervised orthologous group; Psort location: CytoplasmicMembrane, score: 9.99.
  
     0.561
EDR46847.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.548
EDR45720.1
Hypothetical protein; KEGG: pfa:MAL8P1.23 7.0e-14 ubiquitin-protein ligase 1, putative.
  
     0.548
EDR47035.1
Response regulator receiver domain protein; KEGG: ava:Ava_2028 1.0e-13 two component transcriptional regulator, LuxR family; COG: COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain; Psort location: Cytoplasmic, score: 9.98.
  
     0.536
EDR46851.1
DNA-binding helix-turn-helix protein; COG: COG1396 Predicted transcriptional regulators; Psort location: Cytoplasmic, score: 8.87.
 
    0.528
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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