STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDR46879.1Hypothetical protein. (59 aa)    
Predicted Functional Partners:
rlmN
23S rRNA m2A2503 methyltransferase; KEGG: fnu:FN0127 0.0029 Fe-S oxidoreductase; COG: COG0820 Predicted Fe-S-cluster redox enzyme; Psort location: Cytoplasmic, score: 8.87; Belongs to the radical SAM superfamily. RlmN family.
 
     0.763
EDR46890.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.579
EDR46889.1
Hypothetical protein; COG: NOG36404 non supervised orthologous group.
  
     0.484
EDR46661.1
Transcriptional regulator, PadR family; COG: COG1695 Predicted transcriptional regulators; Psort location: Cytoplasmic, score: 8.87.
 
     0.482
EDR46880.1
DNA-binding helix-turn-helix protein; COG: NOG37851 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
 
     0.475
EDR46891.1
Hypothetical protein; KEGG: nme:NMB0700 8.8e-10 IgA-specific serine endopeptidase K01347; COG: COG0791 Cell wall-associated hydrolases (invasion-associated proteins).
  
     0.466
EDR46885.1
Hypothetical protein.
  
     0.444
EDR46882.1
Relaxase/mobilization nuclease domain protein; COG: COG3843 Type IV secretory pathway, VirD2 components (relaxase).
 
     0.442
EDR46886.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.431
EDR46828.1
DNA-binding helix-turn-helix protein; COG: NOG21982 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
  
     0.428
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.