STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDR46880.1DNA-binding helix-turn-helix protein; COG: NOG37851 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87. (117 aa)    
Predicted Functional Partners:
EDR46881.1
Bacterial mobilization protein MobC; COG: NOG22231 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
 
     0.835
EDR46882.1
Relaxase/mobilization nuclease domain protein; COG: COG3843 Type IV secretory pathway, VirD2 components (relaxase).
 
    0.803
EDR46874.1
Hypothetical protein; COG: NOG21981 non supervised orthologous group.
  
     0.754
EDR46885.1
Hypothetical protein.
  
     0.747
EDR46887.1
Hypothetical protein; COG: NOG17367 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
  
     0.740
EDR46889.1
Hypothetical protein; COG: NOG36404 non supervised orthologous group.
  
     0.712
EDR46875.1
KEGG: bcz:BCZK3297 0.00049 RNA polymerase ECF-type sigma factor K03088; COG: NOG16920 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
  
     0.699
EDR46901.1
Hypothetical protein; KEGG: hpa:HPAG1_1000 0.0049 autophosphorylating histidine kinase; COG: NOG34358 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
  
     0.697
EDR46462.1
Hypothetical protein; COG: NOG21981 non supervised orthologous group.
  
     0.633
EDR46890.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.624
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.