EDR45573.1 protein (Dorea formicigenerans) - STRING interaction network

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Score

EDR45573.1

Cold-shock DNA-binding domain protein; Psort location: Cytoplasmic, score: 9.98. (65 aa)

Predicted Functional Partners:

rpsL

0.830

rpsQ

0.824

rplW

0.821

rpmC

0.800

rplV

0.779

rplO

0.777

rplX

0.777

rpsE

0.775

rplC

0.775

rpsS

0.774

Your Current Organism:

Dorea formicigenerans

NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EDR45573.1	rplC	DORFOR_02174	DORFOR_01359	Cold-shock DNA-binding domain protein; Psort location: Cytoplasmic, score: 9.98.	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	0.775
EDR45573.1	rplO	DORFOR_02174	DORFOR_01340	Cold-shock DNA-binding domain protein; Psort location: Cytoplasmic, score: 9.98.	Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.	0.777
EDR45573.1	rplV	DORFOR_02174	DORFOR_01354	Cold-shock DNA-binding domain protein; Psort location: Cytoplasmic, score: 9.98.	Ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.	0.779
EDR45573.1	rplW	DORFOR_02174	DORFOR_01357	Cold-shock DNA-binding domain protein; Psort location: Cytoplasmic, score: 9.98.	Ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.	0.821
EDR45573.1	rplX	DORFOR_02174	DORFOR_01348	Cold-shock DNA-binding domain protein; Psort location: Cytoplasmic, score: 9.98.	Ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.	0.777
EDR45573.1	rpmC	DORFOR_02174	DORFOR_01351	Cold-shock DNA-binding domain protein; Psort location: Cytoplasmic, score: 9.98.	COG: COG0255 Ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.	0.800
EDR45573.1	rpsE	DORFOR_02174	DORFOR_01342	Cold-shock DNA-binding domain protein; Psort location: Cytoplasmic, score: 9.98.	Ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.	0.775
EDR45573.1	rpsL	DORFOR_02174	DORFOR_01082	Cold-shock DNA-binding domain protein; Psort location: Cytoplasmic, score: 9.98.	Ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.	0.830
EDR45573.1	rpsQ	DORFOR_02174	DORFOR_01350	Cold-shock DNA-binding domain protein; Psort location: Cytoplasmic, score: 9.98.	30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.	0.824
EDR45573.1	rpsS	DORFOR_02174	DORFOR_01355	Cold-shock DNA-binding domain protein; Psort location: Cytoplasmic, score: 9.98.	Ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.	0.774
rplC	EDR45573.1	DORFOR_01359	DORFOR_02174	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Cold-shock DNA-binding domain protein; Psort location: Cytoplasmic, score: 9.98.	0.775
rplC	rplO	DORFOR_01359	DORFOR_01340	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.	0.999
rplC	rplV	DORFOR_01359	DORFOR_01354	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.	0.999
rplC	rplW	DORFOR_01359	DORFOR_01357	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.	0.999
rplC	rplX	DORFOR_01359	DORFOR_01348	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.	0.998
rplC	rpmC	DORFOR_01359	DORFOR_01351	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	COG: COG0255 Ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.	0.996
rplC	rpsE	DORFOR_01359	DORFOR_01342	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.	0.998
rplC	rpsL	DORFOR_01359	DORFOR_01082	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.	0.996
rplC	rpsQ	DORFOR_01359	DORFOR_01350	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.	0.997
rplC	rpsS	DORFOR_01359	DORFOR_01355	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.	0.998