Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDR45661.1DNA-binding helix-turn-helix protein; KEGG: blo:BL0712 5.4e-06 aspartate aminotransferase K00812; COG: COG1396 Predicted transcriptional regulators; Psort location: Cytoplasmic, score: 8.87. (241 aa)    
Predicted Functional Partners:
recA
RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
  
 
 0.900
EDR45659.1
Replication initiation factor; COG: COG2946 Putative phage replication protein RstA; Psort location: Cytoplasmic, score: 8.87.
 
     0.827
EDR46518.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.626
EDR46430.1
DNA-binding helix-turn-helix protein; KEGG: mmo:MMOB3450 0.0062 dam; adenine-specific DNA methyltransferase K06223; COG: COG1396 Predicted transcriptional regulators; Psort location: CytoplasmicMembrane, score: 9.99.
  
     0.588
EDR46375.1
Replication initiation factor; COG: COG2946 Putative phage replication protein RstA; Psort location: Cytoplasmic, score: 8.87.
  
     0.584
EDR46830.1
Replication initiation factor; COG: COG2946 Putative phage replication protein RstA; Psort location: Cytoplasmic, score: 8.87.
  
     0.560
EDR48620.1
Transcriptional regulator, AraC family; KEGG: bce:BC3740 8.0e-11 ADA regulatory protein K00567; COG: COG2207 AraC-type DNA-binding domain-containing proteins; Psort location: Cytoplasmic, score: 9.65.
  
 
 0.547
EDR47459.1
COG: COG3209 Rhs family protein; Psort location: Cellwall, score: 9.17.
  
     0.537
EDR47458.1
Hypothetical protein; COG: NOG25267 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
  
     0.524
EDR47903.1
Hypothetical protein.
  
     0.522
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.