STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDR45688.1KEGG: shn:Shewana3_0031 1.8e-61 potassium uptake protein, TrkH family K00961; COG: COG0168 Trk-type K+ transport systems, membrane components; Psort location: CytoplasmicMembrane, score: 10.00. (482 aa)    
Predicted Functional Partners:
trkA
Potassium transporter peripheral membrane component; KEGG: wbm:Wbm0237 4.5e-05 nucleoside-diphosphate-sugar epimerase K00329:K00356; COG: COG0569 K+ transport systems, NAD-binding component; Psort location: Cytoplasmic, score: 8.87.
 
 
 0.988
EDR45687.1
Hypothetical protein; COG: NOG10992 non supervised orthologous group; Psort location: CytoplasmicMembrane, score: 9.99.
       0.764
EDR48492.1
TrkA N-terminal domain protein; COG: COG0569 K+ transport systems, NAD-binding component; Psort location: Cytoplasmic, score: 8.87.
  
 
 0.749
EDR46539.1
TrkA N-terminal domain protein; KEGG: ace:Acel_1805 0.0074 inositol 2-dehydrogenase K00010; COG: COG0569 K+ transport systems, NAD-binding component; Psort location: Cytoplasmic, score: 8.87.
  
 
 0.749
nifJ
KEGG: ctc:CTC01741 0. pyruvate-flavodoxin oxidoreductase K03737; COG: COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit; Psort location: Cytoplasmic, score: 8.87.
   
   0.695
EDR45690.1
KEGG: cpf:CPF_0074 2.9e-166 fusA; translation elongation factor G K02355; COG: COG0480 Translation elongation factors (GTPases); Psort location: Cytoplasmic, score: 9.98.
  
    0.457
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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