Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
trkAPotassium transporter peripheral membrane component; KEGG: wbm:Wbm0237 4.5e-05 nucleoside-diphosphate-sugar epimerase K00329:K00356; COG: COG0569 K+ transport systems, NAD-binding component; Psort location: Cytoplasmic, score: 8.87. (452 aa)    
Predicted Functional Partners:
EDR45688.1
KEGG: shn:Shewana3_0031 1.8e-61 potassium uptake protein, TrkH family K00961; COG: COG0168 Trk-type K+ transport systems, membrane components; Psort location: CytoplasmicMembrane, score: 10.00.
 
 
 0.988
EDR45687.1
Hypothetical protein; COG: NOG10992 non supervised orthologous group; Psort location: CytoplasmicMembrane, score: 9.99.
       0.741
EDR48491.1
KEGG: shn:Shewana3_0031 1.4e-08 potassium uptake protein, TrkH family K00961; COG: COG0168 Trk-type K+ transport systems, membrane components; Psort location: CytoplasmicMembrane, score: 10.00.
  
 
 0.731
EDR46538.1
Potassium uptake protein, TrkH family; KEGG: mav:MAV_1173 3.6e-06 kdpA; K+-transporting ATPase, A subunit K01545; COG: COG0168 Trk-type K+ transport systems, membrane components; Psort location: CytoplasmicMembrane, score: 10.00.
  
 
 0.731
sun
Ribosomal RNA small subunit methyltransferase B; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
  
   0.598
hemC
Hydroxymethylbilane synthase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps.
  
    0.481
cobA
uroporphyrinogen-III C-methyltransferase; KEGG: cno:NT01CX_0261 1.5e-89 uroporphyrinogen III synthase/methyltransferase K00589; COG: COG1587 Uroporphyrinogen-III synthase; Psort location: Cytoplasmic, score: 8.87.
  
    0.481
EDR45690.1
KEGG: cpf:CPF_0074 2.9e-166 fusA; translation elongation factor G K02355; COG: COG0480 Translation elongation factors (GTPases); Psort location: Cytoplasmic, score: 9.98.
       0.466
selA
L-seryl-tRNA(Sec) selenium transferase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis.
   
    0.447
nifJ
KEGG: ctc:CTC01741 0. pyruvate-flavodoxin oxidoreductase K03737; COG: COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit; Psort location: Cytoplasmic, score: 8.87.
  
 
 0.438
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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