Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
EDR45717.1KEGG: tde:TDE0746 1.3e-81 iron compound ABC transporter, ATP-binding protein, putative K02013; Psort location: CytoplasmicMembrane, score: 9.49. (358 aa)    
Predicted Functional Partners:
EDR45718.1
Iron chelate uptake ABC transporter, FeCT family, permease protein; Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.996
EDR45719.1
Periplasmic binding protein.
 
 
 0.976
EDR45720.1
Hypothetical protein; KEGG: pfa:MAL8P1.23 7.0e-14 ubiquitin-protein ligase 1, putative.
 
 
 0.972
EDR45958.1
Hypothetical protein.
 
 
 0.901
cobB
KEGG: lin:lin1154 2.8e-79 cbiA; similar to cobyrinic acid a,c-diamide synthase K03401; COG: COG1797 Cobyrinic acid a,c-diamide synthase; Psort location: Cytoplasmic, score: 8.87.
   
 0.730
cbiK
Cobalt chelatase (CbiK); KEGG: ctc:CTC00743 2.3e-45 cbiK; anaerobic cobalt chelatase cbiK K02190; COG: COG4822 Cobalamin biosynthesis protein CbiK, Co2+ chelatase.
 
     0.699
cbiD
Cobalamin biosynthesis protein CbiD; Catalyzes the methylation of C-1 in cobalt-precorrin-5B to form cobalt-precorrin-6A.
     0.609
queA
S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA).
       0.504
EDR45715.1
RDD family protein; Psort location: Cytoplasmic, score: 8.87.
       0.504
sppA
KEGG: bli:BL00425 3.1e-50 sppA; signal peptide peptidase K04773.
       0.504
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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