Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
allDUreidoglycolate dehydrogenase; KEGG: bld:BLi01130 2.0e-110 yjmC; similar to malate dehydrogenase; RBL03081 K00073; COG: COG2055 Malate/L-lactate dehydrogenases; Psort location: Cytoplasmic, score: 8.87; Belongs to the LDH2/MDH2 oxidoreductase family. (350 aa)    
Predicted Functional Partners:
EDR45780.1
Putative allantoin catabolism protein; COG: COG3257 Uncharacterized protein, possibly involved in glyoxylate utilization; Psort location: Cytoplasmic, score: 8.87.
 
 
  0.980
EDR48330.1
Aminotransferase, class V; KEGG: bsu:BG13993 2.1e-124 yurG; putative aminotransferase K00839; COG: COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase; Psort location: Cytoplasmic, score: 8.87.
  
  
  0.916
EDR45778.1
Putative membrane protein FdrA; KEGG: ape:APE_1072.1 1.2e-11 succinyl-CoA synthetase alpha chain K01902; COG: COG0074 Succinyl-CoA synthetase, alpha subunit; Psort location: Cytoplasmic, score: 8.87.
 
    0.843
EDR45781.1
Hypothetical protein; KEGG: bur:Bcep18194_B0145 1.9e-05 esterase/lipase/thioesterase K01046; COG: COG0657 Esterase/lipase; Psort location: Cytoplasmic, score: 8.87.
 
     0.712
EDR45785.1
Hypothetical protein; COG: NOG22749 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.87.
 
     0.580
EDR45774.1
Allantoate amidohydrolase; KEGG: oih:OB3444 4.0e-80 N-carbamoyl-L-amino acid amidohydrolase K01463; COG: COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases; Psort location: Cytoplasmic, score: 8.87.
 
    0.576
arcC
Carbamate kinase; KEGG: efa:EF2575 4.6e-95 arcC-4; carbamate kinase K00926; COG: COG0549 Carbamate kinase; Psort location: Cytoplasmic, score: 8.87.
       0.483
EDR45776.1
Hypothetical protein; Transports L-lactate across the membrane. Can also transport D-lactate and glycolate; Belongs to the lactate permease family.
 
     0.470
uxuA
Mannonate dehydratase; Catalyzes the dehydration of D-mannonate.
  
    0.441
Your Current Organism:
Dorea formicigenerans
NCBI taxonomy Id: 411461
Other names: D. formicigenerans ATCC 27755, Dorea formicigenerans ATCC 27755
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